| [1] |
Bateman A, Coggill P, Finn R D. DUFs:families in search of function[J]. Acta Crystallographica Section F-Structural Biology and Crystallization Communications, 2010, 66(10):1148—1152.doi: 10.1107/S1744309110001685.
|
| [2] |
Finn R D, Coggill P, Eberhardt R Y, Eddy S R, Mistry J, Mitchell A L, Potter S C, Punta M, Qureshi M, Sangrador-Vegas A, Salazar G A, Tate J, Bateman A. The Pfam protein families database:towards a more sustainable future[J]. Nucleic Acids Research, 2016, 44(D1):D279—D285.doi: 10.1093/nar/gkv1344.
|
| [3] |
El-Gebali S, Mistry J, Bateman A, Eddy S R, Luciani A, Potter S C, Qureshi M, Richardson L J, Salazar G A, Smart A, Sonnhammer E L L, Hirsh L, Paladin L, Piovesan D, Tosatto S C E, Finn R D. The Pfam protein families database in 2019[J]. Nucleic Acids Research, 2019, 47(D1):D427—D432.doi: 10.1093/nar/gky995.
|
| [4] |
Lü P Y, Wan J L, Zhang C T, Hina A, Al Amin G M, Begum N, Zhao T J. Unraveling the diverse roles of neglected genes containing domains of unknown function(DUFs):progress and perspective[J]. International Journal of Molecular Sciences, 2023, 24(4):4187.doi: 10.3390/ijms24044187.
|
| [5] |
Ranocha P, Denancé N, Vanholme R, Freydier A, Martinez Y, Hoffmann L, Köhler L, Pouzet C, Renou J P, Sundberg B, Boerjan W, Goffner D. Walls are thin 1( WAT1),an Arabidopsis homolog of Medicago truncatula NODULIN21,is a tonoplast-localized protein required for secondary wall formation in fibers[J]. The Plant Journal, 2010, 63(3):469—483.doi: 10.1111/j.1365-313X.2010.04256.x.
|
| [6] |
Jensen J K, Kim H, Cocuron J C, Orler R, Ralph J, Wilkerson C G. The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis[J]. The Plant Journal, 2011, 66(3):387—400.doi: 10.1111/j.1365-313X.2010.04475.x.
pmid: 21288268
|
| [7] |
Brown D, Wightman R, Zhang Z N, Gomez L D, Atanassov I, Bukowski J P, Tryfona T, McQueen-Mason S J, Dupree P, Turner S. Arabidopsis genes IRREGULAR XYLEM( IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall[J]. The Plant Journal, 2011, 66(3):401—413.doi: 10.1111/j.1365-313X.2011.04501.x.
|
| [8] |
Cao X, Yang K Z, Xia C, Zhang X Q, Chen L Q, Ye D. Characterization of DUF724 gene family in Arabidopsis thaliana[J]. Plant Molecular Biology, 2010, 72(1/2):61—73.doi: 10.1007/s11103-009-9551-5.
|
| [9] |
Yuan G Q, Zou T, He Z Y, Xiao Q, Li G W, Liu S J, Xiong P P, Chen H, Peng K, Zhang X, Luo T T, Zhou D, Yang S Y, Zhou F X, Zhang K X, Zheng K Y, Han Y H, Zhu J, Liang Y Y, Deng Q M, Wang S Q, Sun C H, Yu X M, Liu H N, Wang L X, Li P, Li S C. Swollen tapetum and sterility 1 is required for tapetum degeneration and pollen wall formation in rice[J]. Plant Physiology, 2022, 190(1):352—370.doi: 10.1093/plphys/kiac307.
|
| [10] |
Li K Y, Chen Y D, Luo Y M, Huang F D, Zhao C Y, Cheng F M, Xiang X, Pan G. A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence[J]. Plant Molecular Biology, 2018, 98(1/2):19—32.doi: 10.1007/s11103-018-0758-1.
|
| [11] |
Yang Y, Yoo C G, Winkeler K A, Collins C M, Hinchee M A W, Jawdy S S, Gunter L E, Engle N L, Pu Y Q, Yang X H, Tschaplinski T J, Ragauskas A J, Tuskan G A, Chen J G. Overexpression of a domain of unknown function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus[J]. Biotechnology for Biofuels, 2017,10:311.doi: 10.1186/s13068-017-0998-3.
|
| [12] |
Albornos L, Martín I, Iglesias R, Jiménez T, Labrador E, Dopico B. ST proteins,a new family of plant tandem repeat proteins with a DUF2775 domain mainly found in Fabaceae and Asteraceae[J]. BMC Plant Biology, 2012,12:207.doi: 10.1186/1471-2229-12-207.
|
| [13] |
Stonebloom S, Ebert B, Xiong G Y, Pattathil S, Birdseye D, Lao J, Pauly M, Hahn M G, Heazlewood J L, Scheller H V. A DUF-246 family glycosyltransferase-like gene affects male fertility and the biosynthesis of pectic arabinogalactans[J]. BMC Plant Biology, 2016, 16:90.doi: 10.1186/s12870-016-0780-x.
pmid: 27091363
|
| [14] |
Miyakawa T, Miyazono K I, Sawano Y, Hatano K I, Tanokura M. Crystal structure of ginkbilobin-2 with homology to the extracellular domain of plant cysteine-rich receptor-like kinases[J]. Proteins, 2009, 77(1):247—251.doi: 10.1002/prot.22494.
|
| [15] |
Miyakawa T, Hatano K I, Miyauchi Y, Suwa Y I, Sawano Y, Tanokura M. A secreted protein with plant-specific cysteine-rich motif functions as a mannose-binding lectin that exhibits antifungal activity[J]. Plant Physiology, 2014, 166(2):766—778.doi: 10.1104/pp.114.242636.
pmid: 25139159
|
| [16] |
Sawano Y, Miyakawa T, Yamazaki H, Tanokura M, Hatano K I. Purification,characterization,and molecular gene cloning of an antifungal protein from Ginkgo biloba seeds[J]. Biological Chemistry, 2007, 388(3):273—280.doi: 10.1515/bc.2007.030.
|
| [17] |
He X L, Hou X N, Shen Y Z, Huang Z J. TaSRG,a wheat transcription factor,significantly affects salt tolerance in transgenic rice and Arabidopsis[J]. FEBS Letters, 2011, 585(8):1231—1237.doi: 10.1016/j.febslet.2011.03.055.
|
| [18] |
Nabi R B S, Tayade R, Imran Q M, Hussain A, Shahid M, Yun B W. Functional insight of nitric-oxide induced DUF genes in Arabidopsis thaliana[J]. Frontiers in Plant Science, 2020, 11:1041.doi: 10.3389/fpls.2020.01041.
|
| [19] |
Nabi R B S, Tayade R, Hussain A, Adhikari A, Lee I J, Loake G J, Yun B W. A novel DUF569 gene is a positive regulator of the drought stress response in Arabidopsis[J]. International Journal of Molecular Sciences, 2021, 22(10):5316.doi: 10.3390/ijms22105316.
|
| [20] |
Luo C K, Guo C M, Wang W J, Wang L J, Chen L. Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice[J]. Plant Cell Reports, 2014, 33(2):323—336.doi: 10.1007/s00299-013-1532-0.
|
| [21] |
Yu G T, Matny O, Gourdoupis S, Rayapuram N, Aljedaani F R, Wang Y L, Nürnberger T, Johnson R, Crean E E, Saur I M L, Gardener C, Yue Y J, Kangara N, Steuernagel B, Hayta S, Smedley M, Harwood W, Patpour M, Wu S Y, Poland J, Jones J D G, Reuber T L, Ronen M, Sharon A, Rouse M N, Xu S, Holušová K, Bartoš J, Molnár I, Karafiátová M, Hirt H, Blilou I, Jaremko Ł, Doležel J, Steffenson B J, Wulff B B H. The wheat stem rust resistance gene Sr43 encodes an unusual protein kinase[J]. Nature Genetics, 2023, 55(6):921—926.doi: 10.1038/s41588-023-01402-1.
|
| [22] |
Chen C J, Chen H, Zhang Y, Thomas H R, Frank M H, He Y H, Xia R. TBtools:an integrative toolkit developed for interactive analyses of big biological data[J]. Molecular Plant, 2020, 13(8):1194—1202.doi: 10.1016/j.molp.2020.06.009.
|
| [23] |
Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X:molecular evolutionary genetics analysis across computing platforms[J]. Molecular Biology and Evolution, 2018, 35(6):1547—1549.doi: 10.1093/molbev/msy096.
|
| [24] |
Subramanian B, Gao S H, Lercher M J, Hu S N, Chen W H. Evolview v3:a webserver for visualization,annotation,and management of phylogenetic trees[J]. Nucleic Acids Research, 2019, 47(W1):W270—W275.doi: 10.1093/nar/gkz357.
|
| [25] |
Bailey T L, Boden M, Buske F A, Frith M, Grant C E, Clementi L, Ren J Y, Li W W, Noble W S. MEME SUITE:tools for motif discovery and searching[J]. Nucleic Acids Research, 2009, 37(Web Server issue):W202—W208.doi: 10.1093/nar/gkp335.
|
| [26] |
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S. PlantCARE,a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences[J]. Nucleic Acids Research, 2002, 30(1):325—327.doi: 10.1093/nar/30.1.325.
|
| [27] |
Zhong H, Zhang H Y, Guo R, Wang Q, Huang X P, Liao J L, Li Y S, Huang Y J, Wang Z H. Characterization and functional divergence of a novel DUF668 gene family in rice based on comprehensive expression patterns[J]. Genes, 2019, 10(12):980.doi: 10.3390/genes10120980.
|
| [28] |
Liu E L, Li Z Q, Luo Z Q, Xu L L, Jin P, Ji S, Zhou G H, Wang Z Y, Zhou Z L, Zhang H. Genome-wide identification of DUF668 gene family and expression analysis under drought and salt stresses in sweet potato[ ipomoea batatas (L.) lam][J]. Genes, 2023, 14(1):217.doi: 10.3390/genes14010217.
|
| [29] |
Zhao J Y, Wang P, Gao W J, Long Y L, Wang Y X, Geng S W, Su X N, Jiao Y, Chen Q J, Qu Y Y. Genome-wide identification of the DUF668 gene family in cotton and expression profiling analysis of GhDUF668 in Gossypium hirsutum under adverse stress[J]. BMC Genomics, 2021, 22(1):395.doi: 10.1186/s12864-021-07716-w.
|
| [30] |
Lu L, Hou Q C, Wang L L, Zhang T Y, Zhao W, Yan T W, Zhao L N, Li J P, Wan X Y. Genome-wide identification and characterization of polygalacturonase gene family in maize( Zea mays L.)[J]. International Journal of Molecular Sciences, 2021, 22(19):10722.doi: 10.3390/ijms221910722.
|
| [31] |
Li S N, Li Y L, Cai Q, Li X, Sun Y, Yu T, Yang J F, Zhang J G. Analysis of the C2H2 gene family in maize( Zea mays L.) under cold stress:identification and expression[J]. Life, 2022, 13(1):122.doi: 10.3390/life13010122.
|
| [32] |
Yin X H, Yuan Y, Han X W, Han S, Li Y T, Ma D F, Fang Z W, Gong S J, Yin J L. Genome-wide identification,characterization,and expression profiling of TaDUF668 gene family in Triticum aestivum[J]. Agronomy, 2023, 13(8):2178.doi: 10.3390/agronomy13082178.
|
| [33] |
Walther D, Brunnemann R, Selbig J. The regulatory code for transcriptional response diversity and its relation to genome structural properties in A.thaliana[J]. PLoS Genetics, 2007, 3(2):e11.doi: 10.1371/journal.pgen.0030011.
pmid: 17291162
|
| [34] |
Xie D W, Wang X N, Fu L S, Sun J, Zheng W, Li Z F. Identification of the trehalose-6-phosphate synthase gene family in winter wheat and expression analysis under conditions of freezing stress[J]. Journal of Genetics, 2015, 94(1):55—65.doi: 10.1007/s12041-015-0495-z.
pmid: 25846877
|
| [35] |
Hu W J, Ren Q Y, Chen Y L, Xu G L, Qian Y X. Genome-wide identification and analysis of WRKY gene family in maize provide insights into regulatory network in response to abiotic stresses[J]. BMC Plant Biology, 2021, 21(1):427.doi: 10.1186/s12870-021-03206-z.
|