Abstract:
Expressed Sequence Tags(ESTs) are a source of simple sequence repeats(SSRs) that can be used to develop molecular markers for genetic studies. The object of the present study is to develop EST-SSR markers from Cucurbitaand uses these markers in quickly purity testing of F1hybrid seed. The availability of 1457 ESTs for Cucurbita,which documented in GenBank,provided a unique opportunity to develop EST-SSR markers,and 215 SSRs were identified among these non-redundant EST sequences. These SSRs contained 2-6 bp nucleotide motifs including 111 different motif types. The trinucleotide repeat is the dominant type,accounting for 40% with 86 motifs, a nd the frequency of occurrence of dinucleotide repeat is 28. 84% with 62 motifs. Among these motifs,CT motif (21,9 . 77%) was the most common type,and then were TC and AAG motifs,accounting for 6. 05% and 5. 58%, respectively. A total of 215 primer pairs were designed and 43 of them were synthesized and used to determine their usability by amplification in 4 Cucurbitainbred lines. The results show that 28 of them could successfully amplify, accounting for 65. 12% of testing primer pairs. Then these primer pairs were used to test the F1hybrid seed purity in Cucurbita. Seed genetic purity from 13 combinations ranged from 79. 2% to 100. 0%,which were in high accordance with those from field grow-out trials. Taken together, this study reported an effective and feasible approach to develop SSR markers for Cucurbita,and demonstrated their usefulness in purity testing of hybrid squash seed.
Key words:
Cucurbita,
EST-SSR,
Marker development,
Hybrid seed purity
CLC Number:
ZHANG Guo-yu, ZHANG Fan, JIANG Li-gang, ZHAI Wei-bo, LI Hai-zhen. EST-SSR Markers Development from Cucurbitaand Their Use in Purity Testing of F1Hybrid Seed[J]. ACTA AGRICULTURAE BOREALI-SINICA, 2011, 26(6): 97-101. doi: 10.7668/hbnxb.2011.06.019.