Abstract:

Bipolaris sorokiniana is one of the important pathogens of maize root rot.The purpose of the present work was to establish a rapid detection method for B.sorokiniana based on the loop-mediated isothermal amplification(LAMP).Firstly,a set of primers for LAMP assay was designed according to the partial sequence of Brn1 involved in the melanin biosynthetic pathway.Then,the optimal reaction temperature was screened for this primer set,the specificity and sensitivity of LAMP reaction were detected,and the LAMP detection was evaluated by using the maize root rot samples artificially inoculated with B.sorokiniana.The results showed that the primer set designed could amplify the target gene Brn1 at 61—68 ℃,with 66 ℃ was the optimal temperature.In the specific detection,the primer set could specifically detect B.sorokiniana from the genomic DNA of 10 main pathogenic fungi isolated from maize root rot plants.In the sensitivity detection,the minimum detection limit for plasmid DNA carrying Brn1 was 10 copies/μL,and amplification could be achieved in about 25 min at the minimum concentration.And,for the detection of maize root rot samples,B.sorokiniana can be detected in 1 pg/μL of maize root tissue DNA.These results indicated that the LAMP detection method for B.sorokiniana established in this study has robust specificity and high sensitivity.

Key words: Maize root rot, Bipolaris sorokiniana, Brn1 gene, LAMP, Detection method