华北农学报 ›› 2008, Vol. 23 ›› Issue (6): 168-170. doi: 10.7668/hbnxb.2008.06.039

所属专题: 水稻

• 论文 • 上一篇    下一篇

杂草稻nrDNA ITS片段的PCR扩增条件优化及测定

刘志文1,2, 韩旭2, 周索童2, 王丽2, 李宪臻2, 陈温福1   

  1. 1. 沈阳农业大学, 水稻研究所, 辽宁, 沈阳, 110161;
    2. 大连工业大学, 生物与食品工程学院, 辽宁, 大连, 116034
  • 收稿日期:2008-09-17 出版日期:2008-12-28
  • 通讯作者: 陈温福(1955-),男,辽宁法库人,教授,博士,主要从事水稻高产育种与栽培技术的研究。
  • 作者简介:刘志文(1972-),男,湖北罗田人,副教授,博士,主要从事杂草稻的分子生物学研究。
  • 基金资助:
    国家自然科学基金(30671262);中国博士后科学基金(20080431156)

Optimizing of the PCR Amplification Conditions and Sequencing the Weedy Rice nrDNA ITS

LIU Zhi-wen1,2, HAN Xu2, ZHOU Suo-tong2, WANG Li2, LI Xian-zhen2, CHEN Wen-fu1   

  1. 1. Rice Institute of Shenyang Agricultural University, Shenyang 110161, China;
    2. College of Biology and Food Technology, Dalian Polytechnic University, Dalian 116034, China
  • Received:2008-09-17 Published:2008-12-28

摘要: 对杂草稻的nrDNA ITS片段的PCR扩增条件进行了优化并测定,建立的PCR最优体系为:20 μL反应体系含1 μL模板DNA,0.125 mmol/L dNTPs,0.5 μmol/L正反向引物,1 U Taq酶,2.0 μL 10 ×Taq PCR Buffer;退火温度为57℃。这样的条件下充分保证了ITS PCR产物的质量和纯度要求,直接测序结果为600 bp左右,与网上结果十分类似,表明结果准确可靠。这些ITS片段的系统学信息将为杂草稻的起源进化提供有力的分子水平证据。

关键词: 杂草稻, nrDNA, ITS, PCR扩增条件, 测序

Abstract: The PCR conditions of the weedy rice nrDNA ITS were optimized in this study,as a result,the PCR reactions were carried out as follows:each reaction mixture contained 1μL genomic DNA,0.125 mmol/L each dNTPs,0.5mmol/L forward and reverse primer,2 10μL 10@PCR reaction Buffer,and the f inal react ion was adjusted to 20 μL with sterilized ddH 2O.The annealing temperature was 57℃.It can assure that PCR products quality and purity using these optimal conditions.The length of the ITS fragments was about 600 bp using the direct sequencing methods and consistent with the genebank data.The phylogenetic information of the weedy rice ITS would conveniently provide the direct molecular evidence to clarify its origin and evolution.

Key words: Weedy rice, nrDNA ITS, PCR amplification conditions, Sequencing

中图分类号: 

引用本文

刘志文, 韩旭, 周索童, 王丽, 李宪臻, 陈温福. 杂草稻nrDNA ITS片段的PCR扩增条件优化及测定[J]. 华北农学报, 2008, 23(6): 168-170. doi: 10.7668/hbnxb.2008.06.039.

LIU Zhi-wen, HAN Xu, ZHOU Suo-tong, WANG Li, LI Xian-zhen, CHEN Wen-fu. Optimizing of the PCR Amplification Conditions and Sequencing the Weedy Rice nrDNA ITS[J]. ACTA AGRICULTURAE BOREALI-SINICA, 2008, 23(6): 168-170. doi: 10.7668/hbnxb.2008.06.039.

使用本文

0
    /   /   推荐 /   导出引用

链接本文: http://www.hbnxb.net/CN/10.7668/hbnxb.2008.06.039

               http://www.hbnxb.net/CN/Y2008/V23/I6/168