华北农学报 ›› 2019, Vol. 34 ›› Issue (2): 205-211. doi: 10.7668/hbnxb.201751218

所属专题: 土壤肥料

• 资源环境·植物保护 • 上一篇    下一篇

基于高通量测序的藜麦连作根际土壤微生物多样性研究

董艳辉1,2, 于宇凤1, 温鑫1, 王亦学1, 聂园军3, 侯丽媛1, 李亚莉1, 刘江1, 任元2,4, 王育川1, 曹秋芬1, 吴慎杰1, 王斌5, 秦永军1,2   

  1. 1. 山西省农业科学院 生物技术研究中心, 山西 太原 030031;
    2. 农业部黄土高原作物基因资源与种质创新重点实验室, 山西 太原 030031;
    3. 山西省农业科学院 农业资源与经济研究所, 山西 太原 030031;
    4. 山西省农业科学院 农作物品种资源研究所, 山西 太原 030031;
    5. 山西省农业科学院 农业环境与资源研究所, 山西 太原 030031
  • 收稿日期:2019-01-23 出版日期:2019-04-28
  • 通讯作者: 秦永军(1969-),男,山西左云人,研究员,博士,主要从事基因组学研究;王斌(1978-),男,山西吕梁人,副研究员,硕士,主要从事作物营养与土壤肥料研究。
  • 作者简介:董艳辉(1982-),男,河南宝丰人,助理研究员,硕士,主要从事藜麦种质资源创新研究。
  • 基金资助:
    山西省农科院博士基金项目(YBSJJ1611);山西省农科院特色农业攻关项目(YGG17065);山西省农科院院县共建项目(YCX2018D2T05);山西省农科院科技创新项目(YCX2018P2T01);山西省科技厅政府购买公共服务项目;农业部黄土高原作物基因资源与种质创新重点实验室子课题

Studies on Diversity of Rhizosphere Microorganism in Quinoa Continuous Cropping Soil by High Throughput Sequencing

DONG Yanhui1,2, YU Yufeng1, WEN Xin1, WANG Yixue1, NIE Yuanjun3, HOU Liyuan1, LI Yali1, LIU Jiang1, REN Yuan2,4, WANG Yuchuan1, CAO Qiufen1, WU Shenjie1, WANG Bin5, QIN Yongjun1,2   

  1. 1. Research Center of Biotechnology, Shanxi Academy of Agricultural Sciences, Taiyuan 030031, China;
    2. Key Laboratory of Crop Gene Resources and Germplasm Enhancement on Loess Plateau, Ministry of Agriculture, Taiyuan 030031, China;
    3. Institute of Agricultural Resources and Economy, Shanxi Academy of Agricultural Sciences, Taiyuan 030031, China;
    4. Institute of Crop Germplasm Resources, Shanxi Academy of Agricultural Sciences, Taiyuan 030031, China;
    5. Institute of Agriculture Environment and Resources, Shanxi Academy of Agricultural Sciences, Taiyuan 030031, China
  • Received:2019-01-23 Published:2019-04-28

摘要: 为了揭示连作藜麦土壤细菌群落结构和多样性的变化,采用高通量测序技术(Illumina-MiSeq)对不同处理(种植1 a、种植2 a)的连作藜麦根际土壤细菌进行16S rRNA基因V4区测序。结果表明,种植1 a较种植2 a的藜麦根际土壤细菌群落丰度和多样性指数都要高,其中,种植1 a较种植2 a的藜麦Chao1指数平均值增加16.4%,ACE指数平均值增加22.9%,Shannon指数平均值增加2.3%;菌群的分类学组成分析结果表明,重茬种植后,伦茨氏菌属、溶杆菌属、中慢生根瘤菌属、丛毛单菌属多样性增多;分枝杆菌属、藤黄单胞菌属、芽单胞菌属、浮霉状菌属等细菌多样性减少。功能预测分析表明,重茬种植后,编码细胞膜转运的功能基因、编码翻译、复制和修复的功能基因、编码外源性物质降解和代谢、多糖生物合成和代谢的功能基因大量减少,编码核苷酸代谢、萜类化合物的代谢、辅因子和维生素的代谢等功能基因少量减少;而编码信号转导和脂类代谢的功能基因有少量增加。

关键词: 藜麦, 连作, 高通量测序, 根际土壤, 生物多样性

Abstract: In order to reveal the changes of bacterial community structure and diversity in quinoa continuous cropping soil, the V4 aera of 16S rRNA gene of bacteria from the quinoa rhizosphere soil with different treatments (planting for 1 a and for 2 a) was sequenced by high throughput sequencing. The results showed that the abundance and diversity index of the bacterial community in rhizosphere soil of planting quinoa for 1 a were higher than those of planting quinoa for 2 a, and the average values of Chao1, ACE and Shannon indexes increased by 16.4%, 22.9% and 2.3%, respectively. The taxonomic composition analysis of bacterial community showed that, after continuous cropping of quinoa, the bacterial diversity of Lentzea, Lysobacter, Mesorhizobium and Polaromonas increased, but the bacterial diversity of Mycobacterium, Luteimonas, Gemmatimonas and Planctomyces decreased. The analysis of functional prediction showed that the functional genes that code the membrane transport, the translation, copy and repair, the degradation and metabolism of exogenous substances and the biosynthesis and metabolism of polysaccharide decreased sigenificantly, and the functional genes coding the metabolism of nucleotide, steroids, cofactors and vitamin also decreased a little, but the functional genes of coding signal transduction and lipid metabolism increased in a small amount.

Key words: Quinoa, Continuous cropping, High-throughput sequencing, Rhizosphere soil, Microbial diversity

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引用本文

董艳辉, 于宇凤, 温鑫, 王亦学, 聂园军, 侯丽媛, 李亚莉, 刘江, 任元, 王育川, 曹秋芬, 吴慎杰, 王斌, 秦永军. 基于高通量测序的藜麦连作根际土壤微生物多样性研究[J]. 华北农学报, 2019, 34(2): 205-211. doi: 10.7668/hbnxb.201751218.

DONG Yanhui, YU Yufeng, WEN Xin, WANG Yixue, NIE Yuanjun, HOU Liyuan, LI Yali, LIU Jiang, REN Yuan, WANG Yuchuan, CAO Qiufen, WU Shenjie, WANG Bin, QIN Yongjun. Studies on Diversity of Rhizosphere Microorganism in Quinoa Continuous Cropping Soil by High Throughput Sequencing[J]. ACTA AGRICULTURAE BOREALI-SINICA, 2019, 34(2): 205-211. doi: 10.7668/hbnxb.201751218.

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