华北农学报 ›› 2026, Vol. 41 ›› Issue (3): 185-197. doi: 10.7668/hbnxb.20196175

所属专题: 番茄 植物保护 生物技术 蔬菜专题

• 资源环境•植物保护 • 上一篇    下一篇

番茄褪绿病毒(ToCV)石家庄分离物全基因组序列特征及荧光定量检测方法的建立

康忱1, 王鹏1, 高亢1, 田哲娟1, 郝玲玉1, 李亚栋1,2, 吴志明1,2   

  1. 1 河北省农林科学院 经济作物研究所, 河北 石家庄 050051
    2 河北省蔬菜创新技术中心, 河北 石家庄 050051
  • 收稿日期:2025-06-04 出版日期:2026-06-28
  • 通讯作者:
    李亚栋(1983-),男,河北石家庄人,副研究员,博士,主要从事蔬菜分子遗传育种研究。
    吴志明(1971-),男,河北邯郸人,研究员,博士,主要从事蔬菜分子遗传育种研究。
  • 作者简介:
    康 忱(1991-),女,河北保定人,副研究员,博士,主要从事蔬菜分子遗传育种研究。
  • 基金资助:
    河北省农林科学院现代农业科技创新专项课题(2022KJCXZX-JZS-1); 河北省农林科学院现代农业科技创新专项课题(2023KJCXZX-JZS-10)

Complete Genomic Sequence Characteristics of Tomato chlorosis virus Shijiazhuang Isolate and Establishment of qPCR Detection Technique

KANG Chen1, WANG Peng1, GAO Kang1, TIAN Zhejuan1, HAO Lingyu1, LI Yadong1,2, WU Zhiming1,2   

  1. 1 Institute of Cash Crops, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang 050051, China
    2 Hebei Vegetable Innovation Technology Center, Shijiazhuang 050051, China
  • Received:2025-06-04 Published:2026-06-28

摘要:

为准确鉴定番茄褪绿病毒病致病来源及河北省石家庄地区番茄褪绿病毒(ToCV)的分类地位,分析了采集于石家庄大河镇番茄种植基地病样进化发生关系,同时建立了ToCV高效鉴定方法。选取NCBI数据库中已公布的ToCV序列进行相似性分析,并将ToCV的RNA1和RNA2全长序列、热激蛋白70同系物(Hsp70h)和外壳蛋白(CP)序列构建系统进化树。结果显示,ToCV-SJZ分离物的RNA1和RNA2序列与ToCV-XS台湾株系亲缘关系最近,序列相似性分别为85.2%,92.4%。进化分析表明,ToCV株系可分为两大类,其中大多数ToCV株系与ToCV-Florida株系形成一个大分支,属于ToCV-Florida株系;而ToCV-SJZ株系单独与ToCV-XS台湾株系归类为一个小的分支,属于ToCV-XS台湾株系。根据进化分支代表性株系ToCV-SJZ、ToCV-XS和ToCV-Florida的CP基因序列,分别设计了可单独和复合检测2个株系的特异性RT-qPCR引物,建立了基于SYBR Green Ⅰ的实时荧光定量PCR检测体系。综上所述,明确了ToCV-SJZ分离物的分类地位,也为抗病种质资源鉴定及科学防控提供技术支持。

关键词: 番茄褪绿病毒(ToCV), 序列分析, 进化分析, SYBR Green Ⅰ荧光定量PCR

Abstract:

In order to identify the pathogenic source of Tomato chlorosis virus disease and clarify the taxonomic status of Tomato chlorosis virus (ToCV)in the Shijiazhuang area of Hebei Province,an analysis of the phylogenetic relationships of diseased samples collected from the Tomato Planting Base in Dahe Town,Shijiazhuang,was conducted.Additionally,an efficient method for ToCV identification was established.The published ToCV sequences in NCBI database were selected for similarity analysis,and the full-length RNA1 and RNA2 sequences of ToCV,Heat-shock protein 70 homologue(Hsp70h)and coat protein(CP)sequences were used to construct the phylogenetic tree.The results showed that the nucleotide(nt)sequences of RNA1 and RNA2 of the ToCV-SJZ shared 85.2% and 92.4% similarity,respectively,with the corresponding sequences of the ToCV-XS Taiwan strain,indicating the closest genetic relationship.The evolutionary analysis showed that ToCV could be divided into two clades,one represented by the Florida strain and the other by the Taiwan strain.According to the CP gene sequences of ToCV-SJZ,ToCV-XS and ToCV-Florida strains,a RT-qPCR assay system based on SYBR Green Ⅰ was established.In conclusion,this study clarifies the taxonomic status of the ToCV-SJZ isolate and provides technical support for the identification of disease-resistant germplasm resources and scientific prevention and control.

Key words: Tomato chlorosis virus(ToCV), Sequence analysis, Phylogenetic analysis, SYBR Green Ⅰ Real-time PCR

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引用本文

康忱, 王鹏, 高亢, 田哲娟, 郝玲玉, 李亚栋, 吴志明. 番茄褪绿病毒(ToCV)石家庄分离物全基因组序列特征及荧光定量检测方法的建立[J]. 华北农学报, 2026, 41(3): 185-197. doi: 10.7668/hbnxb.20196175.

KANG Chen, WANG Peng, GAO Kang, TIAN Zhejuan, HAO Lingyu, LI Yadong, WU Zhiming. Complete Genomic Sequence Characteristics of Tomato chlorosis virus Shijiazhuang Isolate and Establishment of qPCR Detection Technique[J]. Acta Agriculturae Boreali-Sinica, 2026, 41(3): 185-197. doi: 10.7668/hbnxb.20196175.