陆地棉<em>NF-YB</em>基因家族的全基因组分析

doi:10.7668/hbnxb.2016.05.004

华北农学报 ›› 2016, Vol. 31 ›› Issue (5): 21-27. doi: 10.7668/hbnxb.2016.05.004

所属专题： 棉花；生物技术；

陆地棉NF-YB基因家族的全基因组分析

刘静¹, 徐珍珍², 袁娜¹, 郭月¹, 张保龙¹, 杜建厂¹

1. 江苏省农业科学院农业生物技术研究所, 江苏省农业生物学重点实验室, 江苏南京 210014;
2. 江苏省农业科学院经济作物研究所, 农业部长江下游棉花和油菜重点实验室, 江苏南京 210014

收稿日期:2016-07-12 出版日期:2016-10-28
作者简介:刘静(1986-),女,山东济南人,助理研究员,硕士,主要从事生物信息学研究。
基金资助:
江苏省“333”人才工程项目（BRA2013267）；江苏省农业科技自主创新基金项目（CX13（3059））；棉花生物学国家重点实验室开放课题（CB2016B03）

Genome-wide Analysis of NF-YB Gene Family in Gossypium hirsutum L.

LIU Jing¹, XU Zhenzhen², YUAN Na¹, GUO Yue¹, ZHANG Baolong¹, DU Jianchang¹

1. Institute of Biotechnology, Jiangsu Academy of Agricultural Sciences, Provincial Key Laboratory of Agrobiology, Nanjing 210014, China;
2. Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Key Laboratory of Cotton and Rapeseed in the Lower Reaches of the Yangtze River, Ministry of Agriculture, Nanjing 210014, China

Received:2016-07-12 Published:2016-10-28

摘要/Abstract

摘要： 为了进一步了解NF-YB基因家族结构的功能，利用生物信息学手段，系统研究了陆地棉标准系TM-1基因组中NF-YB基因家族的数目、亚细胞定位、染色体分布、进化关系、基序以及组织表达情况。结果表明：TM-1基因组中共有41个NF-YB基因家族成员，它们含有相同的CBFD_NFYB_HMF结构域，大部分定位到细胞核内；41个NF-YB基因家族成员分布在19条染色体上，其中有19组成员在A亚组和D亚组中表现为直系同源基因；进化树分为Ⅰ和Ⅱ 2个小组，每个小组成员间具有相似的基序类型和排列顺序；组织表达分析则发现，在这41个NF-YB基因家族成员中，至少有24个成员可以进行表达，且表现出一定的组织特异性。

关键词: NF-YB基因家族, 陆地棉, 生物信息

Abstract: In order to further understand the structure and function of NF-YB gene family,we have systematically investigated the number,subcellular localization,chromosome distribution,evolutionary relationships,motif and tissue expression pattern of of family in the genome of Gossypium hirsutum L.acc.TM-1 by bioinformatics method.41 NF-YB genes were identified in TM-1 genome;the 41 NF-YB genes contain the same CBFD_NFYB_HMF domain,and most of them were located in nucleus; they distributed on 19 chromosomes,and there were 19 pairs of the genes on the A subgroup and D subgroup were orthologous genes; 41 NF-YB genes can be divided into groupⅠand groupⅡ,and there were similar motif type and arrangement in each group;.24 NF-YB genes were expressed,but the expression pattern varied among different tissues.

Key words: NF-YB gene family, Gossypium hirsutum L., Bioinformatics

中图分类号:

Q78
S562.03

刘静, 徐珍珍, 袁娜, 郭月, 张保龙, 杜建厂. 陆地棉NF-YB基因家族的全基因组分析[J]. 华北农学报, 2016, 31(5): 21-27. doi: 10.7668/hbnxb.2016.05.004.

LIU Jing, XU Zhenzhen, YUAN Na, GUO Yue, ZHANG Baolong, DU Jianchang. Genome-wide Analysis of NF-YB Gene Family in Gossypium hirsutum L.[J]. ACTA AGRICULTURAE BOREALI-SINICA, 2016, 31(5): 21-27. doi: 10.7668/hbnxb.2016.05.004.

http://www.hbnxb.net/CN/Y2016/V31/I5/21

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