华北农学报 ›› 2018, Vol. 33 ›› Issue (S1): 84-88. doi: 10.7668/hbnxb.2018.S1.014

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小反刍兽疫病毒实时荧光定量PCR检测方法的建立

李林杰1,2,3, 刘萍1,2,3, 马鹏1,2,3, 王悦萦1,2,3, 郭富城1,2,3, 马晓霞1,2,3, 周建华3, 柏家林1,2,3   

  1. 1. 西北民族大学 生物医学研究中心, 甘肃 兰州 730030;
    2. 西北民族大学 生命科学与工程学院, 甘肃 兰州 730030;
    3. 中国农业科学院 兰州兽医研究所, 甘肃 兰州 730046
  • 收稿日期:2018-09-10 出版日期:2018-12-01
  • 通讯作者: 柏家林(1966-),男,甘肃天水人,教授,博士,主要从事动物细胞基因工程、基因工程疫苗研究。
  • 作者简介:李林杰(1992-),女,山西大同人,硕士,主要从事动物分子病毒学与分子免疫研究。
  • 基金资助:
    国家自然科学基金项目(31860696);西北民族大学“双一流”引导专项-生物工程特色学科(10018703);动物医学生物工程创新团队发展计划(IRT_17R88);甘肃省科技计划项目(17YF1WA166);国家自然科学基金项目(31260533)

Establishment of Real Time Fluorescence RT-PCR Detection Method for Peste des petits ruminants virus

LI Linjie1,2,3, LIU Ping1,2,3, MA Peng1,2,3, WANG Yueying1,2,3, GUO Fucheng1,2,3, MA Xiaoxia1,2,3, ZHOU Jianhua3, BAI Jialin1,2,3   

  1. 1. Biomedical Research Center, Northwest Minzu University, Lanzhou 730030, China;
    2. Life Science and Engineering College, Northwest Minzu University, Lanzhou 730030, China;
    3. Lanzhou Veterinary Institute, Chinese Academy of Agricultural Sciences, Lanzhou 730046, China
  • Received:2018-09-10 Published:2018-12-01

摘要: 为了建立一种快速检测小反刍兽疫病毒的方法。根据GenBank中公布的PPRV Nigeria75/1株H基因序列设计2对引物,PCR扩增出1 830 bp H基因,构建标准质粒pMD-18-H。以标准质粒优化反应条件,建立了小反刍兽疫病毒H基因SYBR Green Ⅰ实时荧光定量PCR检测方法。最优反应体系25 μL:2×SYBR qPCR Mix 12.5 μL,模板DNA 1 μL,特异引物各0.2 μL(0.2 μmol/L),DEPC H2O 10.5 μL;最佳反应条件:94℃ 2 min;94℃ 5 s,57℃ 30 s,40个循环,Ct值与标准质粒模板浓度在3.28×104~3.28×10-2 copies/μL 7个浓度梯度呈良好线性关系y=-2.913 x+36.904,斜率为-2.913,扩增效率120.5%,相关系数R2=0.994。建立的实时荧光定量PCR检测方法比普通PCR灵敏度高10 000倍,稳定性好,特异性强,对PPRV的准确诊断和定量检测具有重要意义。

关键词: 小反刍兽疫病毒(PPRV), SYBR Green Ⅰ, 实时荧光定量PCR

Abstract: To establish a method for rapid detection of Peste des petits ruminants virus (PPRV). Two pairs of primers was designed according to H gene sequence of PPRV Nigeria75/1 that published by GenBank,the full-length cDNA of 1 830 bp H gene of PPCV was amplified by RT-PCR.The amplicon was subcloned to pMD-18 to construct a standard plasmid pMD-18-H for Real-time fluorescence PCR.After optimization of the conditions,the H gene of Peste des petits ruminants virus (PPRV) SYBR Green Ⅰ Real-time fluorescence qPCR detection method was established.The 25 μL optimal reaction system was composed of 2×SYBR qPCR Mix 12.5 L,PPRV cDNA 1 μL,F3 and F4 primer 0.2 μL each (0.2 mmol/L),DEPC H2O 10.5 μL.The best reaction conditions was 94℃,2 min; followed by 40 cycles with 94℃ 5 s,57℃ 30 s.The standard curve displayed a good linear relationship between Ct value and initial amounts of tatal virus DNA at a range of 3.28×104~3.28×10-2 copies/μL.The correlation coefficient,amplification efficiency and slope were 0.994, 120.5% and -2.913,respectively.The established Real-time fluorescence quantitative PCR,which has high stability and strong specificity,is 10 000 times sensitive than normal PCR.The method is of great significance to the accurate diagnosis and quantitative detection of PPRV.

Key words: Peste des petits ruminants virus(PPRV), SYBR Green Ⅰ, Real-time fluorescence qPCR

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引用本文

李林杰, 刘萍, 马鹏, 王悦萦, 郭富城, 马晓霞, 周建华, 柏家林. 小反刍兽疫病毒实时荧光定量PCR检测方法的建立[J]. 华北农学报, 2018, 33(S1): 84-88. doi: 10.7668/hbnxb.2018.S1.014.

LI Linjie, LIU Ping, MA Peng, WANG Yueying, GUO Fucheng, MA Xiaoxia, ZHOU Jianhua, BAI Jialin. Establishment of Real Time Fluorescence RT-PCR Detection Method for Peste des petits ruminants virus[J]. ACTA AGRICULTURAE BOREALI-SINICA, 2018, 33(S1): 84-88. doi: 10.7668/hbnxb.2018.S1.014.

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