华北农学报 ›› 2017, Vol. 32 ›› Issue (6): 85-91. doi: 10.7668/hbnxb.2017.06.013

所属专题: 土壤肥料 生物技术

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肥城桃果实己糖激酶Ⅱ基因克隆、生物信息学分析及原核表达

张凯, 高珊, 朱树华   

  1. 山东农业大学 化学与材料科学学院, 山东 泰安 271018
  • 收稿日期:2017-09-21 出版日期:2017-12-28
  • 通讯作者: 朱树华(1978-),男,山东泰安人,教授,博士,硕士生导师,主要从事化学生物学、果实生理学研究。
  • 作者简介:张凯(1993-),男,山东淄博人,在读硕士,主要从事植物分子生物学研究。
  • 基金资助:
    国家自然科学基金项目(31270723)

Clone,Bioinformatics Analysis and Protein Induced Expression of HK Ⅱ Gene in Feicheng Peach Fruits

ZHANG Kai, GAO Shan, ZHU Shuhua   

  1. College of Chemistry and Material Science, Shandong Agricultural University, Tai'an 271018, China
  • Received:2017-09-21 Published:2017-12-28

摘要: 为了深入研究己糖激酶(HK)的同工酶HK Ⅱ调控线粒体通透性转换孔(MPTP)的开放机理,通过RT-PCR技术和RACE技术,以克隆得到的肥城桃果实cDNA为模板,成功克隆得到HK Ⅱ基因全长,经原核表达和SDS-PAGE检测,体外构建原核表达载体pET-30a-HK Ⅱ ,成功地在大肠杆菌BL21(DE3)中进行表达;使用镍柱纯化法,得到纯化的重组蛋白。克隆得到HK Ⅱ基因共1 835 bp,其中编码区1 496 bp,共编码497个氨基酸。HK Ⅱ蛋白预测分子式为C2379H3846N652O717S17,原子总数为7 611个,分子量为53.6 kDa,理论等电点为6.17,总平均疏水指数为0.023,表明HK Ⅱ蛋白为疏水性蛋白。TMHMM跨膜结构预测HK Ⅱ为跨膜蛋白,有1次跨膜,绝大部分在膜外。从二级结构预测结果来看,HK Ⅱ蛋白由15段α螺旋和11段β折叠和无规则卷曲构成。肥城桃HK Ⅱ蛋白预测的三级结构呈V字型,折叠结构较多。系统进化树和氨基酸相似性分析发现,桃果实HK Ⅱ与枇杷的相似度最高,达到了96.98%,桃果实HK Ⅱ与其他植物HK的氨基酸的同源性较高,说明HK Ⅱ具有较高的保守性。为进一步解析HK Ⅱ蛋白的结构和功能从而探讨HK Ⅱ调控线粒体MPTP的机理奠定了基础。

关键词: 肥城桃, 己糖激酶, 基因克隆, 生物信息学分析, 原核表达

Abstract: In order to study the regulation mechanism of hexokinase Ⅱ (HK Ⅱ) to mitochondrial permeability transition pore (MPTP) opening,a cDNA encoding HK Ⅱ protein was isolated from Feicheng peach fruits by RT-PCR and rapid amplification of cDNA ends (RACE).Induced by IPTG and determinated by SDS-PAGE,the expression vector pET-30a-HK Ⅱ was expressed by BL21.The HK Ⅱ protein was purified through nickel chelating affinity chromatography.The full-length cDNA of HK Ⅱ was 1 835 bp including 1 496 bp of coding sequence encoding a polypeptide of 497 amino acids.The predicted protein molecular formula of HK Ⅱ was C2379H3846N652O717S17,containing 7 611 atoms.For HK Ⅱ,the molecular weight was 53.6 kDa,the theoretical isoelectric point was about 6.17,and the total average hydrophobicity index was 0.023,which indicated that HK Ⅱ protein was a hydrophobic protein.TMHMM transmembrane structure predicted that HK Ⅱ was a transmembrane protein with 1 transmembrane,most of which were outside the membrane.According to the results of the two level prediction,the HK Ⅱ protein was composed of 15 segments of α helix and 11 segments of β folding and the irregular curl.The three level structure of peach HK Ⅱ protein in Feicheng showed a V font,there were a large number of folded structure.It showed the highest homology with the loquat (96.98%) through the phylogenetic tree and multiple sequences alignment analysis.The high homology of amino acids of HK in peach fruit and other plants,indicating that HK Ⅱ is more conservative.The results would lay a foundation for further analysis of the structure and function of HK Ⅱ protein to explore the mechanism of HK Ⅱ regulation of mitochondrial MPTP.

Key words: Feicheng peach fruits, Hexokinase, Gene cloning, Bioinformatics analysis, Prokaryotic expression

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引用本文

张凯, 高珊, 朱树华. 肥城桃果实己糖激酶Ⅱ基因克隆、生物信息学分析及原核表达[J]. 华北农学报, 2017, 32(6): 85-91. doi: 10.7668/hbnxb.2017.06.013.

ZHANG Kai, GAO Shan, ZHU Shuhua. Clone,Bioinformatics Analysis and Protein Induced Expression of HK Ⅱ Gene in Feicheng Peach Fruits[J]. ACTA AGRICULTURAE BOREALI-SINICA, 2017, 32(6): 85-91. doi: 10.7668/hbnxb.2017.06.013.

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