华北农学报 ›› 2020, Vol. 35 ›› Issue (5): 17-25. doi: 10.7668/hbnxb.20191173

所属专题: 黄瓜 盐碱胁迫

• 作物遗传育种·种质资源·生物技术 • 上一篇    下一篇

转录组学分析外源H2S调控黄瓜响应盐胁迫的机理

蒋景龙1, 李丽2   

  1. 1. 陕西理工大学 生物科学与工程学院, 陕西 汉中 723001;
    2. 陕西理工大学 化学与环境科学学院, 陕西 汉中 723001
  • 收稿日期:2020-07-02 出版日期:2020-10-28
  • 作者简介:蒋景龙(1980-),男,山东枣庄人,副教授,博士,主要从事细胞逆境适应研究。
  • 基金资助:
    陕西省科技厅项目(2018KTLM-11);陕西省教育厅项目(17JK0152)

Transcriptomics Analysis of the Mechanism of Exogenous H2S Regulating Cucumber in Response to Salt Stress

JIANG Jinglong1, LI Li2   

  1. 1. School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong 723001, China;
    2. College of Chemical&Environment Science, Shaanxi University of Technology, Hanzhong 723001, China
  • Received:2020-07-02 Published:2020-10-28

摘要: 为了探明硫化氢调控植物响应盐胁迫的机理,以黄瓜幼苗为试材,通过浇灌Hoagland营养液(CK)、200 mmol/L NaCl(T)和200 mmol/L NaCl+15 μmol/L NaHS(H2S供体试剂,S)处理,利用Illumina HiSeq高通量测序对黄瓜根系进行转录组测序及差异表达基因分析。结果发现,9个样本获得高质量序列共365.35 Mb,与参考基因组进行比对,比例为86.27%~88.64%的序列总数为315.74 Mb。差异表达基因分析显示:T组较CK组上调基因有1 168个,下调基因有1 076个;S组较T组上调基因有435个,下调基因有218个。GO富集分析显示:差异表达基因主要富集在分子功能大类中的结合和催化活性类,生物过程大类中的代谢过程、细胞过程和单一生物过程类及细胞组分大类中的膜和膜组分类中。KEGG富集分析将3个比较组的差异表达基因分别归为139,75,127个代谢通路,T-S比较组的差异表达基因主要富集在植物激素信号转导、内质网中的蛋白质加工和光合作用通路中。筛选10个可能与H2S调控黄瓜响应盐胁迫相关的基因:CSC1样蛋白ERD4基因、NADH型硝酸还原酶样基因、蛋白质TIFY 10B样基因、丙二烯氧化物环化酶基因、BTB/POZTAZ结构域蛋白1样基因、麦冬蛋白-3样基因、丝裂原激活蛋白激酶激酶3样基因、转录因子bHLH18样基因、IAA-氨基酸水解酶ILR1样4基因和钾通道AKT1基因。研究H2S调控黄瓜响应盐胁迫的机理,为提高植物耐盐性提供了理论数据和参考依据。

关键词: 黄瓜, H2S, NaCl胁迫, GO分析, KEGG分析

Abstract: In order to verify the mechanism of hydrogen sulfide to regulate the plant response to salt stress, cucumber seedlings were used as materials and treated with Hoagland(CK), 200 mmol/L NaCl(T) and 200 mmol/L NaCl+15 mmol/L NaHS (the donor of H2S, S). The expression of transcriptome genes of cucumber roots were studied by using Illumina HiSeq high-throughput sequencing technology. A total of 365.35 Mb of Clean reads were obtained from 9 samples. Mapped reads was 315.74 Mb, and the percentage was 86.27%-88.64%. Analysis of differentially expressed genes revealed that T group had 1 168 genes up-regulated and 1 076 genes down-regulated compared with CK group, and S group had 435 genes up-regulated and 218 genes down-regulated compared with T group. The Gene Ontology (GO) enrichment analysis revealed that the differentially expressed genes were mainly concentrated in binding and catalytic activity in molecular functional classes; in biological process classes, they were mainly enriched in metabolic processes and cellular processes and single-organism process; Among cell components, the membrane and membrane part classes were mainly concentrated. KEGG enrichment analysis of the differentially expressed genes could be divided into 139, 75 and 127 pathway of 3 comparison groups, respectively. The differentially expressed genes in S group compared to the T group were mainly abundant during plant hormone signal transduction, protein processing in endoplasmic reticulum and photosynthesis pathway. Screening of 10 genes that might be related to H2S regulating cucumber response to salt stress:CSC1-like protein ERD4, nitrate reductase (NADH)-like, protein TIFY 10B-like, allene oxide cyclase, BTB/POZ and TAZ domain-containing protein 1-like, tricalbin-3-like, mitogen-activated protein kinase kinase 3-like, transcription factor bHLH18-like, IAA-amino acid hydrolase ILR1-like 4 and potassium channel AKT1. Studying the mechanism of H2S regulating cucumber response to salt stress provides theoretical data and reference basis for improving plant salt tolerance.

Key words: Cucumber, H2S, NaCl stress, GO analysis, KEGG analysis

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引用本文

蒋景龙, 李丽. 转录组学分析外源H2S调控黄瓜响应盐胁迫的机理[J]. 华北农学报, 2020, 35(5): 17-25. doi: 10.7668/hbnxb.20191173.

JIANG Jinglong, LI Li. Transcriptomics Analysis of the Mechanism of Exogenous H2S Regulating Cucumber in Response to Salt Stress[J]. ACTA AGRICULTURAE BOREALI-SINICA, 2020, 35(5): 17-25. doi: 10.7668/hbnxb.20191173.

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